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12/9/2008

Affymetrix Technology Powers Cincinnati Children's Hospital's Innovative Test for Jaundice

12/8/2008

Affymetrix Completes Acquisition of Panomics

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Plant and Animal Genome XVII Conference

1/10/2009-1/14/2009

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Achieving ROI in Personalized Medicine: Barriers, Incentives, and Pathways to Commercialization

1/27/2009-1/28/2009

GeneChip® HT MG-430 PM Array Plate

HT Array Plate
HT Array Plate
HT Array Plate

Proven performance from the industry standard

The GeneChip® HT MG-430 PM Array Plate enables high-throughput expression profiling of 24 or 96 samples at a time using the same industry-standard content as the GeneChip® Mouse Genome 430 2.0 Array*.

The HT MG-430 PM Array Plate enables you to:

  • Measure gene expression of more than 39,000 transcripts on a single array
  • Get accurate and reproducible data by using multiple independent measurements for each transcript

RMA signal correlations (left to right): Rat Focus Array Plates versus HT RG-230 PM Array Plates (RG PM); HT RG-230 PM Array Plates versus HT RG-230 PM Array Plates; HT MG-430 A Plates (430A) versus HT MG-430 PM Array Plates (MG PM); and HT MG-430 PM Array Plates versus HT MG-430 PM Array Plates.
Figure 1
RMA signal correlations (left to right): Rat Focus Array Plates versus HT RG-230 PM Array Plates (RG PM); HT RG-230 PM Array Plates versus HT RG-230 PM Array Plates; HT MG-430 A Plates (430A) versus HT MG-430 PM Array Plates (MG PM); and HT MG-430 PM Array Plates versus HT MG-430 PM Array Plates.

Key Benefits

  • Enables increased productivity and efficiency through parallel processing
    • Process 24 or 96 samples on a single array plate
  • Same industry-leading performance and content as the Mouse Genome 430 2.0 Array in cartridge format
    • Strong signal and fold change correlation to previous designs
  • Multiple independent measurements per transcript for increased confidence in your results
    • Interrogates more sequence than a single probe measurement
  • Conveniently packaged
    • Individual 24- and 96-array plates available
    • All processing trays included

Content Profile

Sequences used in the design of the array were selected from GenBank®, dbEST and RefSeq. The sequence clusters were created from the UniGene database (Build 107, June 2002) and refined by analysis and comparison with the publicly available draft assembly of the mouse genome from the Whitehead Institute Center for Genome Research (MGSC, April 2002).

* The HT MG-430 PM Array Plate only retains perfect match (PM) probes from the cartridge design. Mismatch (MM) probes were removed.

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Part # Description Details
901257 GeneChip® HT MG-430 PM 24-Array Plate Contains 1 24-array plate and necessary hybridization, wash and scan trays.
901258 GeneChip® HT MG-430 PM 96-Array Plate Contains 1 96-array plate and necessary hybridization, wash and scan trays.

FAQs

HT PM Plate Arrays

Manuals

Expression Analysis Technical Manual For HT Array Plates Using the GeneChip® Array Station (pdf, 7.4 MB)

Quick Reference Cards

QC Metrics for Human, Mouse and Rat HT PM Array Plates (pdf, 111 KB)

Library Files

HT MG-430 PM Array Plate (zip, 14 MB)

Package Inserts

HT MG-430 PM Array Plate (pdf, 701 KB)

Alignment, Annotation, and Sequence Files

Information about using Alignment, Annotation, and Sequence files

Current NetAffx Annotation Files

HT_MG-430_PM Annotations, CSV format (14 MB, 12/1/08)

HT_MG-430_PM BLASTP annotations, CSV Format (30 KB, 11/24/08)

Note: NetAffx annotation files are intended for use in automated analysis. Some are not compatible with all spreadsheet applications. Please use the NetAffx Analysis Center to limit download data to your probe sets of interest. Annotation CSV files for the exon arrays are split into a probe set-level annotation file and a transcript cluster-level annotation file; exon array CSV files are compatible with ExACT.

Sequence Files

HT_MG-430_PM Probe Sequences, FASTA format (8.9 MB, 7/16/08)

HT_MG-430_PM Probe Sequences, tabular format (8.0 MB, 7/16/08)

Archived NetAffx Annotation Files

HT_MG-430_PM Annotations, CSV format (15 MB, 9/15/08)

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